Structured arrays¶
Introduction¶
Structured arrays are ndarrays whose datatype is a composition of simpler datatypes organized as a sequence of named fields. For example,
>>> x = np.array([('Rex', 9, 81.0), ('Fido', 3, 27.0)],
... dtype=[('name', 'U10'), ('age', 'i4'), ('weight', 'f4')])
>>> x
array([('Rex', 9, 81.), ('Fido', 3, 27.)],
dtype=[('name', 'U10'), ('age', '<i4'), ('weight', '<f4')])
Here x
is a one-dimensional array of length two whose datatype is a
structure with three fields: 1. A string of length 10 or less named ‘name’, 2.
a 32-bit integer named ‘age’, and 3. a 32-bit float named ‘weight’.
If you index x
at position 1 you get a structure:
>>> x[1]
('Fido', 3, 27.0)
You can access and modify individual fields of a structured array by indexing with the field name:
>>> x['age']
array([9, 3], dtype=int32)
>>> x['age'] = 5
>>> x
array([('Rex', 5, 81.), ('Fido', 5, 27.)],
dtype=[('name', 'U10'), ('age', '<i4'), ('weight', '<f4')])
Structured datatypes are designed to be able to mimic ‘structs’ in the C language, and share a similar memory layout. They are meant for interfacing with C code and for low-level manipulation of structured buffers, for example for interpreting binary blobs. For these purposes they support specialized features such as subarrays, nested datatypes, and unions, and allow control over the memory layout of the structure.
Users looking to manipulate tabular data, such as stored in csv files, may find other pydata projects more suitable, such as xarray, pandas, or DataArray. These provide a high-level interface for tabular data analysis and are better optimized for that use. For instance, the C-struct-like memory layout of structured arrays in numpy can lead to poor cache behavior in comparison.
Structured Datatypes¶
A structured datatype can be thought of as a sequence of bytes of a certain length (the structure’s itemsize) which is interpreted as a collection of fields. Each field has a name, a datatype, and a byte offset within the structure. The datatype of a field may be any numpy datatype including other structured datatypes, and it may also be a subarray data type which behaves like an ndarray of a specified shape. The offsets of the fields are arbitrary, and fields may even overlap. These offsets are usually determined automatically by numpy, but can also be specified.
Structured Datatype Creation¶
Structured datatypes may be created using the function numpy.dtype
.
There are 4 alternative forms of specification which vary in flexibility and
conciseness. These are further documented in the
Data Type Objects reference page, and in
summary they are:
A list of tuples, one tuple per field
Each tuple has the form
(fieldname, datatype, shape)
where shape is optional.fieldname
is a string (or tuple if titles are used, see Field Titles below),datatype
may be any object convertible to a datatype, andshape
is a tuple of integers specifying subarray shape.>>> np.dtype([('x', 'f4'), ('y', np.float32), ('z', 'f4', (2, 2))]) dtype([('x', '<f4'), ('y', '<f4'), ('z', '<f4', (2, 2))])
If
fieldname
is the empty string''
, the field will be given a default name of the formf#
, where#
is the integer index of the field, counting from 0 from the left:>>> np.dtype([('x', 'f4'), ('', 'i4'), ('z', 'i8')]) dtype([('x', '<f4'), ('f1', '<i4'), ('z', '<i8')])
The byte offsets of the fields within the structure and the total structure itemsize are determined automatically.
A string of comma-separated dtype specifications
In this shorthand notation any of the string dtype specifications may be used in a string and separated by commas. The itemsize and byte offsets of the fields are determined automatically, and the field names are given the default names
f0
,f1
, etc.>>> np.dtype('i8, f4, S3') dtype([('f0', '<i8'), ('f1', '<f4'), ('f2', 'S3')]) >>> np.dtype('3int8, float32, (2, 3)float64') dtype([('f0', 'i1', (3,)), ('f1', '<f4'), ('f2', '<f8', (2, 3))])
A dictionary of field parameter arrays
This is the most flexible form of specification since it allows control over the byte-offsets of the fields and the itemsize of the structure.
The dictionary has two required keys, ‘names’ and ‘formats’, and four optional keys, ‘offsets’, ‘itemsize’, ‘aligned’ and ‘titles’. The values for ‘names’ and ‘formats’ should respectively be a list of field names and a list of dtype specifications, of the same length. The optional ‘offsets’ value should be a list of integer byte-offsets, one for each field within the structure. If ‘offsets’ is not given the offsets are determined automatically. The optional ‘itemsize’ value should be an integer describing the total size in bytes of the dtype, which must be large enough to contain all the fields.
>>> np.dtype({'names': ['col1', 'col2'], 'formats': ['i4', 'f4']}) dtype([('col1', '<i4'), ('col2', '<f4')]) >>> np.dtype({'names': ['col1', 'col2'], ... 'formats': ['i4', 'f4'], ... 'offsets': [0, 4], ... 'itemsize': 12}) dtype({'names': ['col1', 'col2'], 'formats': ['<i4', '<f4'], 'offsets': [0, 4], 'itemsize': 12})
Offsets may be chosen such that the fields overlap, though this will mean that assigning to one field may clobber any overlapping field’s data. As an exception, fields of
numpy.object_
type cannot overlap with other fields, because of the risk of clobbering the internal object pointer and then dereferencing it.The optional ‘aligned’ value can be set to
True
to make the automatic offset computation use aligned offsets (see Automatic Byte Offsets and Alignment), as if the ‘align’ keyword argument ofnumpy.dtype
had been set to True.The optional ‘titles’ value should be a list of titles of the same length as ‘names’, see Field Titles below.
A dictionary of field names
The use of this form of specification is discouraged, but documented here because older numpy code may use it. The keys of the dictionary are the field names and the values are tuples specifying type and offset:
>>> np.dtype({'col1': ('i1', 0), 'col2': ('f4', 1)}) dtype([('col1', 'i1'), ('col2', '<f4')])
This form is discouraged because Python dictionaries do not preserve order in Python versions before Python 3.6, and the order of the fields in a structured dtype has meaning. Field Titles may be specified by using a 3-tuple, see below.
Manipulating and Displaying Structured Datatypes¶
The list of field names of a structured datatype can be found in the names
attribute of the dtype object:
>>> d = np.dtype([('x', 'i8'), ('y', 'f4')])
>>> d.names
('x', 'y')
The field names may be modified by assigning to the names
attribute using a
sequence of strings of the same length.
The dtype object also has a dictionary-like attribute, fields
, whose keys
are the field names (and Field Titles, see below) and whose
values are tuples containing the dtype and byte offset of each field.
>>> d.fields
mappingproxy({'x': (dtype('int64'), 0), 'y': (dtype('float32'), 8)})
Both the names
and fields
attributes will equal None
for
unstructured arrays. The recommended way to test if a dtype is structured is
with if dt.names is not None rather than if dt.names, to account for dtypes
with 0 fields.
The string representation of a structured datatype is shown in the “list of tuples” form if possible, otherwise numpy falls back to using the more general dictionary form.
Automatic Byte Offsets and Alignment¶
Numpy uses one of two methods to automatically determine the field byte offsets
and the overall itemsize of a structured datatype, depending on whether
align=True
was specified as a keyword argument to numpy.dtype
.
By default (align=False
), numpy will pack the fields together such that
each field starts at the byte offset the previous field ended, and the fields
are contiguous in memory.
>>> def print_offsets(d):
... print("offsets:", [d.fields[name][1] for name in d.names])
... print("itemsize:", d.itemsize)
>>> print_offsets(np.dtype('u1, u1, i4, u1, i8, u2'))
offsets: [0, 1, 2, 6, 7, 15]
itemsize: 17
If align=True
is set, numpy will pad the structure in the same way many C
compilers would pad a C-struct. Aligned structures can give a performance
improvement in some cases, at the cost of increased datatype size. Padding
bytes are inserted between fields such that each field’s byte offset will be a
multiple of that field’s alignment, which is usually equal to the field’s size
in bytes for simple datatypes, see PyArray_Descr.alignment
. The
structure will also have trailing padding added so that its itemsize is a
multiple of the largest field’s alignment.
>>> print_offsets(np.dtype('u1, u1, i4, u1, i8, u2', align=True))
offsets: [0, 1, 4, 8, 16, 24]
itemsize: 32
Note that although almost all modern C compilers pad in this way by default, padding in C structs is C-implementation-dependent so this memory layout is not guaranteed to exactly match that of a corresponding struct in a C program. Some work may be needed, either on the numpy side or the C side, to obtain exact correspondence.
If offsets were specified using the optional offsets
key in the
dictionary-based dtype specification, setting align=True
will check that
each field’s offset is a multiple of its size and that the itemsize is a
multiple of the largest field size, and raise an exception if not.
If the offsets of the fields and itemsize of a structured array satisfy the
alignment conditions, the array will have the ALIGNED
flag
set.
A convenience function numpy.lib.recfunctions.repack_fields
converts an
aligned dtype or array to a packed one and vice versa. It takes either a dtype
or structured ndarray as an argument, and returns a copy with fields re-packed,
with or without padding bytes.
Field Titles¶
In addition to field names, fields may also have an associated title, an alternate name, which is sometimes used as an additional description or alias for the field. The title may be used to index an array, just like a field name.
To add titles when using the list-of-tuples form of dtype specification, the field name may be specified as a tuple of two strings instead of a single string, which will be the field’s title and field name respectively. For example:
>>> np.dtype([(('my title', 'name'), 'f4')])
dtype([(('my title', 'name'), '<f4')])
When using the first form of dictionary-based specification, the titles may be
supplied as an extra 'titles'
key as described above. When using the second
(discouraged) dictionary-based specification, the title can be supplied by
providing a 3-element tuple (datatype, offset, title)
instead of the usual
2-element tuple:
>>> np.dtype({'name': ('i4', 0, 'my title')})
dtype([(('my title', 'name'), '<i4')])
The dtype.fields
dictionary will contain titles as keys, if any
titles are used. This means effectively that a field with a title will be
represented twice in the fields dictionary. The tuple values for these fields
will also have a third element, the field title. Because of this, and because
the names
attribute preserves the field order while the fields
attribute may not, it is recommended to iterate through the fields of a dtype
using the names
attribute of the dtype, which will not list titles, as
in:
>>> for name in d.names:
... print(d.fields[name][:2])
(dtype('int64'), 0)
(dtype('float32'), 8)
Union types¶
Structured datatypes are implemented in numpy to have base type
numpy.void
by default, but it is possible to interpret other numpy
types as structured types using the (base_dtype, dtype)
form of dtype
specification described in
Data Type Objects. Here, base_dtype
is
the desired underlying dtype, and fields and flags will be copied from
dtype
. This dtype is similar to a ‘union’ in C.
Indexing and Assignment to Structured arrays¶
Assigning data to a Structured Array¶
There are a number of ways to assign values to a structured array: Using python tuples, using scalar values, or using other structured arrays.
Assignment from Python Native Types (Tuples)¶
The simplest way to assign values to a structured array is using python tuples. Each assigned value should be a tuple of length equal to the number of fields in the array, and not a list or array as these will trigger numpy’s broadcasting rules. The tuple’s elements are assigned to the successive fields of the array, from left to right:
>>> x = np.array([(1, 2, 3), (4, 5, 6)], dtype='i8, f4, f8')
>>> x[1] = (7, 8, 9)
>>> x
array([(1, 2., 3.), (7, 8., 9.)],
dtype=[('f0', '<i8'), ('f1', '<f4'), ('f2', '<f8')])
Assignment from Scalars¶
A scalar assigned to a structured element will be assigned to all fields. This happens when a scalar is assigned to a structured array, or when an unstructured array is assigned to a structured array:
>>> x = np.zeros(2, dtype='i8, f4, ?, S1')
>>> x[:] = 3
>>> x
array([(3, 3., True, b'3'), (3, 3., True, b'3')],
dtype=[('f0', '<i8'), ('f1', '<f4'), ('f2', '?'), ('f3', 'S1')])
>>> x[:] = np.arange(2)
>>> x
array([(0, 0., False, b'0'), (1, 1., True, b'1')],
dtype=[('f0', '<i8'), ('f1', '<f4'), ('f2', '?'), ('f3', 'S1')])
Structured arrays can also be assigned to unstructured arrays, but only if the structured datatype has just a single field:
>>> twofield = np.zeros(2, dtype=[('A', 'i4'), ('B', 'i4')])
>>> onefield = np.zeros(2, dtype=[('A', 'i4')])
>>> nostruct = np.zeros(2, dtype='i4')
>>> nostruct[:] = twofield
Traceback (most recent call last):
...
TypeError: Cannot cast array data from dtype([('A', '<i4'), ('B', '<i4')]) to dtype('int32') according to the rule 'unsafe'
Assignment from other Structured Arrays¶
Assignment between two structured arrays occurs as if the source elements had been converted to tuples and then assigned to the destination elements. That is, the first field of the source array is assigned to the first field of the destination array, and the second field likewise, and so on, regardless of field names. Structured arrays with a different number of fields cannot be assigned to each other. Bytes of the destination structure which are not included in any of the fields are unaffected.
>>> a = np.zeros(3, dtype=[('a', 'i8'), ('b', 'f4'), ('c', 'S3')])
>>> b = np.ones(3, dtype=[('x', 'f4'), ('y', 'S3'), ('z', 'O')])
>>> b[:] = a
>>> b
array([(0., b'0.0', b''), (0., b'0.0', b''), (0., b'0.0', b'')],
dtype=[('x', '<f4'), ('y', 'S3'), ('z', 'O')])
Assignment involving subarrays¶
When assigning to fields which are subarrays, the assigned value will first be broadcast to the shape of the subarray.
Indexing Structured Arrays¶
Accessing Individual Fields¶
Individual fields of a structured array may be accessed and modified by indexing the array with the field name.
>>> x = np.array([(1, 2), (3, 4)], dtype=[('foo', 'i8'), ('bar', 'f4')])
>>> x['foo']
array([1, 3])
>>> x['foo'] = 10
>>> x
array([(10, 2.), (10, 4.)],
dtype=[('foo', '<i8'), ('bar', '<f4')])
The resulting array is a view into the original array. It shares the same memory locations and writing to the view will modify the original array.
>>> y = x['bar']
>>> y[:] = 11
>>> x
array([(10, 11.), (10, 11.)],
dtype=[('foo', '<i8'), ('bar', '<f4')])
This view has the same dtype and itemsize as the indexed field, so it is typically a non-structured array, except in the case of nested structures.
>>> y.dtype, y.shape, y.strides
(dtype('float32'), (2,), (12,))
If the accessed field is a subarray, the dimensions of the subarray are appended to the shape of the result:
>>> x = np.zeros((2, 2), dtype=[('a', np.int32), ('b', np.float64, (3, 3))])
>>> x['a'].shape
(2, 2)
>>> x['b'].shape
(2, 2, 3, 3)
Accessing Multiple Fields¶
One can index and assign to a structured array with a multi-field index, where the index is a list of field names.
Warning
The behavior of multi-field indexes changed from Numpy 1.15 to Numpy 1.16.
The result of indexing with a multi-field index is a view into the original array, as follows:
>>> a = np.zeros(3, dtype=[('a', 'i4'), ('b', 'i4'), ('c', 'f4')])
>>> a[['a', 'c']]
array([(0, 0.), (0, 0.), (0, 0.)],
dtype={'names':['a','c'], 'formats':['<i4','<f4'], 'offsets':[0,8], 'itemsize':12})
Assignment to the view modifies the original array. The view’s fields will be in the order they were indexed. Note that unlike for single-field indexing, the dtype of the view has the same itemsize as the original array, and has fields at the same offsets as in the original array, and unindexed fields are merely missing.
Warning
In Numpy 1.15, indexing an array with a multi-field index returned a copy of
the result above, but with fields packed together in memory as if
passed through numpy.lib.recfunctions.repack_fields
.
The new behavior as of Numpy 1.16 leads to extra “padding” bytes at the location of unindexed fields compared to 1.15. You will need to update any code which depends on the data having a “packed” layout. For instance code such as:
>>> a[['a', 'c']].view('i8') # Fails in Numpy 1.16
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ValueError: When changing to a smaller dtype, its size must be a divisor of the size of original dtype
will need to be changed. This code has raised a FutureWarning
since
Numpy 1.12, and similar code has raised FutureWarning
since 1.7.
In 1.16 a number of functions have been introduced in the
numpy.lib.recfunctions
module to help users account for this
change. These are
numpy.lib.recfunctions.repack_fields
.
numpy.lib.recfunctions.structured_to_unstructured
,
numpy.lib.recfunctions.unstructured_to_structured
,
numpy.lib.recfunctions.apply_along_fields
,
numpy.lib.recfunctions.assign_fields_by_name
, and
numpy.lib.recfunctions.require_fields
.
The function numpy.lib.recfunctions.repack_fields
can always be
used to reproduce the old behavior, as it will return a packed copy of the
structured array. The code above, for example, can be replaced with:
>>> from numpy.lib.recfunctions import repack_fields
>>> repack_fields(a[['a', 'c']]).view('i8') # supported in 1.16
array([0, 0, 0])
Furthermore, numpy now provides a new function
numpy.lib.recfunctions.structured_to_unstructured
which is a safer
and more efficient alternative for users who wish to convert structured
arrays to unstructured arrays, as the view above is often indeded to do.
This function allows safe conversion to an unstructured type taking into
account padding, often avoids a copy, and also casts the datatypes
as needed, unlike the view. Code such as:
>>> b = np.zeros(3, dtype=[('x', 'f4'), ('y', 'f4'), ('z', 'f4')])
>>> b[['x', 'z']].view('f4')
array([0., 0., 0., 0., 0., 0., 0., 0., 0.], dtype=float32)
can be made safer by replacing with:
>>> from numpy.lib.recfunctions import structured_to_unstructured
>>> structured_to_unstructured(b[['x', 'z']])
array([0, 0, 0])
Assignment to an array with a multi-field index modifies the original array:
>>> a[['a', 'c']] = (2, 3)
>>> a
array([(2, 0, 3.), (2, 0, 3.), (2, 0, 3.)],
dtype=[('a', '<i4'), ('b', '<i4'), ('c', '<f4')])
This obeys the structured array assignment rules described above. For example, this means that one can swap the values of two fields using appropriate multi-field indexes:
>>> a[['a', 'c']] = a[['c', 'a']]
Indexing with an Integer to get a Structured Scalar¶
Indexing a single element of a structured array (with an integer index) returns a structured scalar:
>>> x = np.array([(1, 2., 3.)], dtype='i, f, f')
>>> scalar = x[0]
>>> scalar
(1, 2., 3.)
>>> type(scalar)
<class 'numpy.void'>
Unlike other numpy scalars, structured scalars are mutable and act like views into the original array, such that modifying the scalar will modify the original array. Structured scalars also support access and assignment by field name:
>>> x = np.array([(1, 2), (3, 4)], dtype=[('foo', 'i8'), ('bar', 'f4')])
>>> s = x[0]
>>> s['bar'] = 100
>>> x
array([(1, 100.), (3, 4.)],
dtype=[('foo', '<i8'), ('bar', '<f4')])
Similarly to tuples, structured scalars can also be indexed with an integer:
>>> scalar = np.array([(1, 2., 3.)], dtype='i, f, f')[0]
>>> scalar[0]
1
>>> scalar[1] = 4
Thus, tuples might be thought of as the native Python equivalent to numpy’s
structured types, much like native python integers are the equivalent to
numpy’s integer types. Structured scalars may be converted to a tuple by
calling numpy.ndarray.item
:
>>> scalar.item(), type(scalar.item())
((1, 4.0, 3.0), <class 'tuple'>)
Viewing Structured Arrays Containing Objects¶
In order to prevent clobbering object pointers in fields of
object
type, numpy currently does not allow views of structured
arrays containing objects.
Structure Comparison¶
If the dtypes of two void structured arrays are equal, testing the equality of
the arrays will result in a boolean array with the dimensions of the original
arrays, with elements set to True
where all fields of the corresponding
structures are equal. Structured dtypes are equal if the field names,
dtypes and titles are the same, ignoring endianness, and the fields are in
the same order:
>>> a = np.zeros(2, dtype=[('a', 'i4'), ('b', 'i4')])
>>> b = np.ones(2, dtype=[('a', 'i4'), ('b', 'i4')])
>>> a == b
array([False, False])
Currently, if the dtypes of two void structured arrays are not equivalent the
comparison fails, returning the scalar value False
. This behavior is
deprecated as of numpy 1.10 and will raise an error or perform elementwise
comparison in the future.
The <
and >
operators always return False
when comparing void
structured arrays, and arithmetic and bitwise operations are not supported.
Record Arrays¶
As an optional convenience numpy provides an ndarray subclass,
numpy.recarray
that allows access to fields of structured arrays by
attribute instead of only by index.
Record arrays use a special datatype, numpy.record
, that allows
field access by attribute on the structured scalars obtained from the array.
The numpy.rec
module provides functions for creating recarrays from
various objects.
Additional helper functions for creating and manipulating structured arrays
can be found in numpy.lib.recfunctions
.
The simplest way to create a record array is with numpy.rec.array
:
>>> recordarr = np.rec.array([(1, 2., 'Hello'), (2, 3., "World")],
... dtype=[('foo', 'i4'),('bar', 'f4'), ('baz', 'S10')])
>>> recordarr.bar
array([ 2., 3.], dtype=float32)
>>> recordarr[1:2]
rec.array([(2, 3., b'World')],
dtype=[('foo', '<i4'), ('bar', '<f4'), ('baz', 'S10')])
>>> recordarr[1:2].foo
array([2], dtype=int32)
>>> recordarr.foo[1:2]
array([2], dtype=int32)
>>> recordarr[1].baz
b'World'
numpy.rec.array
can convert a wide variety of arguments into record
arrays, including structured arrays:
>>> arr = np.array([(1, 2., 'Hello'), (2, 3., "World")],
... dtype=[('foo', 'i4'), ('bar', 'f4'), ('baz', 'S10')])
>>> recordarr = np.rec.array(arr)
The numpy.rec
module provides a number of other convenience functions for
creating record arrays, see record array creation routines.
A record array representation of a structured array can be obtained using the appropriate view:
>>> arr = np.array([(1, 2., 'Hello'), (2, 3., "World")],
... dtype=[('foo', 'i4'),('bar', 'f4'), ('baz', 'a10')])
>>> recordarr = arr.view(dtype=np.dtype((np.record, arr.dtype)),
... type=np.recarray)
For convenience, viewing an ndarray as type numpy.recarray
will
automatically convert to numpy.record
datatype, so the dtype can be left
out of the view:
>>> recordarr = arr.view(np.recarray)
>>> recordarr.dtype
dtype((numpy.record, [('foo', '<i4'), ('bar', '<f4'), ('baz', 'S10')]))
To get back to a plain ndarray both the dtype and type must be reset. The following view does so, taking into account the unusual case that the recordarr was not a structured type:
>>> arr2 = recordarr.view(recordarr.dtype.fields or recordarr.dtype, np.ndarray)
Record array fields accessed by index or by attribute are returned as a record array if the field has a structured type but as a plain ndarray otherwise.
>>> recordarr = np.rec.array([('Hello', (1, 2)), ("World", (3, 4))],
... dtype=[('foo', 'S6'),('bar', [('A', int), ('B', int)])])
>>> type(recordarr.foo)
<class 'numpy.ndarray'>
>>> type(recordarr.bar)
<class 'numpy.recarray'>
Note that if a field has the same name as an ndarray attribute, the ndarray attribute takes precedence. Such fields will be inaccessible by attribute but will still be accessible by index.
Recarray Helper Functions¶
Collection of utilities to manipulate structured arrays.
Most of these functions were initially implemented by John Hunter for matplotlib. They have been rewritten and extended for convenience.
- numpy.lib.recfunctions.append_fields(base, names, data, dtypes=None, fill_value=- 1, usemask=True, asrecarray=False)[source]¶
Add new fields to an existing array.
The names of the fields are given with the names arguments, the corresponding values with the data arguments. If a single field is appended, names, data and dtypes do not have to be lists but just values.
- Parameters
- basearray
Input array to extend.
- namesstring, sequence
String or sequence of strings corresponding to the names of the new fields.
- dataarray or sequence of arrays
Array or sequence of arrays storing the fields to add to the base.
- dtypessequence of datatypes, optional
Datatype or sequence of datatypes. If None, the datatypes are estimated from the data.
- fill_value{float}, optional
Filling value used to pad missing data on the shorter arrays.
- usemask{False, True}, optional
Whether to return a masked array or not.
- asrecarray{False, True}, optional
Whether to return a recarray (MaskedRecords) or not.
- numpy.lib.recfunctions.apply_along_fields(func, arr)[source]¶
Apply function ‘func’ as a reduction across fields of a structured array.
This is similar to apply_along_axis, but treats the fields of a structured array as an extra axis. The fields are all first cast to a common type following the type-promotion rules from
numpy.result_type
applied to the field’s dtypes.- Parameters
- funcfunction
Function to apply on the “field” dimension. This function must support an axis argument, like np.mean, np.sum, etc.
- arrndarray
Structured array for which to apply func.
- Returns
- outndarray
Result of the recution operation
Examples
>>> from numpy.lib import recfunctions as rfn >>> b = np.array([(1, 2, 5), (4, 5, 7), (7, 8 ,11), (10, 11, 12)], ... dtype=[('x', 'i4'), ('y', 'f4'), ('z', 'f8')]) >>> rfn.apply_along_fields(np.mean, b) array([ 2.66666667, 5.33333333, 8.66666667, 11. ]) >>> rfn.apply_along_fields(np.mean, b[['x', 'z']]) array([ 3. , 5.5, 9. , 11. ])
- numpy.lib.recfunctions.assign_fields_by_name(dst, src, zero_unassigned=True)[source]¶
Assigns values from one structured array to another by field name.
Normally in numpy >= 1.14, assignment of one structured array to another copies fields “by position”, meaning that the first field from the src is copied to the first field of the dst, and so on, regardless of field name.
This function instead copies “by field name”, such that fields in the dst are assigned from the identically named field in the src. This applies recursively for nested structures. This is how structure assignment worked in numpy >= 1.6 to <= 1.13.
- Parameters
- dstndarray
- srcndarray
The source and destination arrays during assignment.
- zero_unassignedbool, optional
If True, fields in the dst for which there was no matching field in the src are filled with the value 0 (zero). This was the behavior of numpy <= 1.13. If False, those fields are not modified.
- numpy.lib.recfunctions.drop_fields(base, drop_names, usemask=True, asrecarray=False)[source]¶
Return a new array with fields in drop_names dropped.
Nested fields are supported.
Changed in version 1.18.0:
drop_fields
returns an array with 0 fields if all fields are dropped, rather than returningNone
as it did previously.- Parameters
- basearray
Input array
- drop_namesstring or sequence
String or sequence of strings corresponding to the names of the fields to drop.
- usemask{False, True}, optional
Whether to return a masked array or not.
- asrecarraystring or sequence, optional
Whether to return a recarray or a mrecarray (asrecarray=True) or a plain ndarray or masked array with flexible dtype. The default is False.
Examples
>>> from numpy.lib import recfunctions as rfn >>> a = np.array([(1, (2, 3.0)), (4, (5, 6.0))], ... dtype=[('a', np.int64), ('b', [('ba', np.double), ('bb', np.int64)])]) >>> rfn.drop_fields(a, 'a') array([((2., 3),), ((5., 6),)], dtype=[('b', [('ba', '<f8'), ('bb', '<i8')])]) >>> rfn.drop_fields(a, 'ba') array([(1, (3,)), (4, (6,))], dtype=[('a', '<i8'), ('b', [('bb', '<i8')])]) >>> rfn.drop_fields(a, ['ba', 'bb']) array([(1,), (4,)], dtype=[('a', '<i8')])
- numpy.lib.recfunctions.find_duplicates(a, key=None, ignoremask=True, return_index=False)[source]¶
Find the duplicates in a structured array along a given key
- Parameters
- aarray-like
Input array
- key{string, None}, optional
Name of the fields along which to check the duplicates. If None, the search is performed by records
- ignoremask{True, False}, optional
Whether masked data should be discarded or considered as duplicates.
- return_index{False, True}, optional
Whether to return the indices of the duplicated values.
Examples
>>> from numpy.lib import recfunctions as rfn >>> ndtype = [('a', int)] >>> a = np.ma.array([1, 1, 1, 2, 2, 3, 3], ... mask=[0, 0, 1, 0, 0, 0, 1]).view(ndtype) >>> rfn.find_duplicates(a, ignoremask=True, return_index=True) (masked_array(data=[(1,), (1,), (2,), (2,)], mask=[(False,), (False,), (False,), (False,)], fill_value=(999999,), dtype=[('a', '<i8')]), array([0, 1, 3, 4]))
- numpy.lib.recfunctions.flatten_descr(ndtype)[source]¶
Flatten a structured data-type description.
Examples
>>> from numpy.lib import recfunctions as rfn >>> ndtype = np.dtype([('a', '<i4'), ('b', [('ba', '<f8'), ('bb', '<i4')])]) >>> rfn.flatten_descr(ndtype) (('a', dtype('int32')), ('ba', dtype('float64')), ('bb', dtype('int32')))
- numpy.lib.recfunctions.get_fieldstructure(adtype, lastname=None, parents=None)[source]¶
Returns a dictionary with fields indexing lists of their parent fields.
This function is used to simplify access to fields nested in other fields.
- Parameters
- adtypenp.dtype
Input datatype
- lastnameoptional
Last processed field name (used internally during recursion).
- parentsdictionary
Dictionary of parent fields (used interbally during recursion).
Examples
>>> from numpy.lib import recfunctions as rfn >>> ndtype = np.dtype([('A', int), ... ('B', [('BA', int), ... ('BB', [('BBA', int), ('BBB', int)])])]) >>> rfn.get_fieldstructure(ndtype) ... # XXX: possible regression, order of BBA and BBB is swapped {'A': [], 'B': [], 'BA': ['B'], 'BB': ['B'], 'BBA': ['B', 'BB'], 'BBB': ['B', 'BB']}
- numpy.lib.recfunctions.get_names(adtype)[source]¶
Returns the field names of the input datatype as a tuple.
- Parameters
- adtypedtype
Input datatype
Examples
>>> from numpy.lib import recfunctions as rfn >>> rfn.get_names(np.empty((1,), dtype=int)) Traceback (most recent call last): ... AttributeError: 'numpy.ndarray' object has no attribute 'names'
>>> rfn.get_names(np.empty((1,), dtype=[('A',int), ('B', float)])) Traceback (most recent call last): ... AttributeError: 'numpy.ndarray' object has no attribute 'names' >>> adtype = np.dtype([('a', int), ('b', [('ba', int), ('bb', int)])]) >>> rfn.get_names(adtype) ('a', ('b', ('ba', 'bb')))
- numpy.lib.recfunctions.get_names_flat(adtype)[source]¶
Returns the field names of the input datatype as a tuple. Nested structure are flattened beforehand.
- Parameters
- adtypedtype
Input datatype
Examples
>>> from numpy.lib import recfunctions as rfn >>> rfn.get_names_flat(np.empty((1,), dtype=int)) is None Traceback (most recent call last): ... AttributeError: 'numpy.ndarray' object has no attribute 'names' >>> rfn.get_names_flat(np.empty((1,), dtype=[('A',int), ('B', float)])) Traceback (most recent call last): ... AttributeError: 'numpy.ndarray' object has no attribute 'names' >>> adtype = np.dtype([('a', int), ('b', [('ba', int), ('bb', int)])]) >>> rfn.get_names_flat(adtype) ('a', 'b', 'ba', 'bb')
- numpy.lib.recfunctions.join_by(key, r1, r2, jointype='inner', r1postfix='1', r2postfix='2', defaults=None, usemask=True, asrecarray=False)[source]¶
Join arrays r1 and r2 on key key.
The key should be either a string or a sequence of string corresponding to the fields used to join the array. An exception is raised if the key field cannot be found in the two input arrays. Neither r1 nor r2 should have any duplicates along key: the presence of duplicates will make the output quite unreliable. Note that duplicates are not looked for by the algorithm.
- Parameters
- key{string, sequence}
A string or a sequence of strings corresponding to the fields used for comparison.
- r1, r2arrays
Structured arrays.
- jointype{‘inner’, ‘outer’, ‘leftouter’}, optional
If ‘inner’, returns the elements common to both r1 and r2. If ‘outer’, returns the common elements as well as the elements of r1 not in r2 and the elements of not in r2. If ‘leftouter’, returns the common elements and the elements of r1 not in r2.
- r1postfixstring, optional
String appended to the names of the fields of r1 that are present in r2 but absent of the key.
- r2postfixstring, optional
String appended to the names of the fields of r2 that are present in r1 but absent of the key.
- defaults{dictionary}, optional
Dictionary mapping field names to the corresponding default values.
- usemask{True, False}, optional
Whether to return a MaskedArray (or MaskedRecords is asrecarray==True) or a ndarray.
- asrecarray{False, True}, optional
Whether to return a recarray (or MaskedRecords if usemask==True) or just a flexible-type ndarray.
Notes
The output is sorted along the key.
A temporary array is formed by dropping the fields not in the key for the two arrays and concatenating the result. This array is then sorted, and the common entries selected. The output is constructed by filling the fields with the selected entries. Matching is not preserved if there are some duplicates…
- numpy.lib.recfunctions.merge_arrays(seqarrays, fill_value=- 1, flatten=False, usemask=False, asrecarray=False)[source]¶
Merge arrays field by field.
- Parameters
- seqarrayssequence of ndarrays
Sequence of arrays
- fill_value{float}, optional
Filling value used to pad missing data on the shorter arrays.
- flatten{False, True}, optional
Whether to collapse nested fields.
- usemask{False, True}, optional
Whether to return a masked array or not.
- asrecarray{False, True}, optional
Whether to return a recarray (MaskedRecords) or not.
Notes
Without a mask, the missing value will be filled with something, depending on what its corresponding type:
-1
for integers-1.0
for floating point numbers'-'
for characters'-1'
for stringsTrue
for boolean values
XXX: I just obtained these values empirically
Examples
>>> from numpy.lib import recfunctions as rfn >>> rfn.merge_arrays((np.array([1, 2]), np.array([10., 20., 30.]))) array([( 1, 10.), ( 2, 20.), (-1, 30.)], dtype=[('f0', '<i8'), ('f1', '<f8')])
>>> rfn.merge_arrays((np.array([1, 2], dtype=np.int64), ... np.array([10., 20., 30.])), usemask=False) array([(1, 10.0), (2, 20.0), (-1, 30.0)], dtype=[('f0', '<i8'), ('f1', '<f8')]) >>> rfn.merge_arrays((np.array([1, 2]).view([('a', np.int64)]), ... np.array([10., 20., 30.])), ... usemask=False, asrecarray=True) rec.array([( 1, 10.), ( 2, 20.), (-1, 30.)], dtype=[('a', '<i8'), ('f1', '<f8')])
- numpy.lib.recfunctions.rec_append_fields(base, names, data, dtypes=None)[source]¶
Add new fields to an existing array.
The names of the fields are given with the names arguments, the corresponding values with the data arguments. If a single field is appended, names, data and dtypes do not have to be lists but just values.
- Parameters
- basearray
Input array to extend.
- namesstring, sequence
String or sequence of strings corresponding to the names of the new fields.
- dataarray or sequence of arrays
Array or sequence of arrays storing the fields to add to the base.
- dtypessequence of datatypes, optional
Datatype or sequence of datatypes. If None, the datatypes are estimated from the data.
- Returns
- appended_arraynp.recarray
See also
- numpy.lib.recfunctions.rec_drop_fields(base, drop_names)[source]¶
Returns a new numpy.recarray with fields in drop_names dropped.
- numpy.lib.recfunctions.rec_join(key, r1, r2, jointype='inner', r1postfix='1', r2postfix='2', defaults=None)[source]¶
Join arrays r1 and r2 on keys. Alternative to join_by, that always returns a np.recarray.
See also
join_by
equivalent function
- numpy.lib.recfunctions.recursive_fill_fields(input, output)[source]¶
Fills fields from output with fields from input, with support for nested structures.
- Parameters
- inputndarray
Input array.
- outputndarray
Output array.
Notes
output should be at least the same size as input
Examples
>>> from numpy.lib import recfunctions as rfn >>> a = np.array([(1, 10.), (2, 20.)], dtype=[('A', np.int64), ('B', np.float64)]) >>> b = np.zeros((3,), dtype=a.dtype) >>> rfn.recursive_fill_fields(a, b) array([(1, 10.), (2, 20.), (0, 0.)], dtype=[('A', '<i8'), ('B', '<f8')])
- numpy.lib.recfunctions.rename_fields(base, namemapper)[source]¶
Rename the fields from a flexible-datatype ndarray or recarray.
Nested fields are supported.
- Parameters
- basendarray
Input array whose fields must be modified.
- namemapperdictionary
Dictionary mapping old field names to their new version.
Examples
>>> from numpy.lib import recfunctions as rfn >>> a = np.array([(1, (2, [3.0, 30.])), (4, (5, [6.0, 60.]))], ... dtype=[('a', int),('b', [('ba', float), ('bb', (float, 2))])]) >>> rfn.rename_fields(a, {'a':'A', 'bb':'BB'}) array([(1, (2., [ 3., 30.])), (4, (5., [ 6., 60.]))], dtype=[('A', '<i8'), ('b', [('ba', '<f8'), ('BB', '<f8', (2,))])])
- numpy.lib.recfunctions.repack_fields(a, align=False, recurse=False)[source]¶
Re-pack the fields of a structured array or dtype in memory.
The memory layout of structured datatypes allows fields at arbitrary byte offsets. This means the fields can be separated by padding bytes, their offsets can be non-monotonically increasing, and they can overlap.
This method removes any overlaps and reorders the fields in memory so they have increasing byte offsets, and adds or removes padding bytes depending on the align option, which behaves like the align option to
np.dtype
.If align=False, this method produces a “packed” memory layout in which each field starts at the byte the previous field ended, and any padding bytes are removed.
If align=True, this methods produces an “aligned” memory layout in which each field’s offset is a multiple of its alignment, and the total itemsize is a multiple of the largest alignment, by adding padding bytes as needed.
- Parameters
- andarray or dtype
array or dtype for which to repack the fields.
- alignboolean
If true, use an “aligned” memory layout, otherwise use a “packed” layout.
- recurseboolean
If True, also repack nested structures.
- Returns
- repackedndarray or dtype
Copy of a with fields repacked, or a itself if no repacking was needed.
Examples
>>> from numpy.lib import recfunctions as rfn >>> def print_offsets(d): ... print("offsets:", [d.fields[name][1] for name in d.names]) ... print("itemsize:", d.itemsize) ... >>> dt = np.dtype('u1, <i8, <f8', align=True) >>> dt dtype({'names': ['f0', 'f1', 'f2'], 'formats': ['u1', '<i8', '<f8'], 'offsets': [0, 8, 16], 'itemsize': 24}, align=True) >>> print_offsets(dt) offsets: [0, 8, 16] itemsize: 24 >>> packed_dt = rfn.repack_fields(dt) >>> packed_dt dtype([('f0', 'u1'), ('f1', '<i8'), ('f2', '<f8')]) >>> print_offsets(packed_dt) offsets: [0, 1, 9] itemsize: 17
- numpy.lib.recfunctions.require_fields(array, required_dtype)[source]¶
Casts a structured array to a new dtype using assignment by field-name.
This function assigns from the old to the new array by name, so the value of a field in the output array is the value of the field with the same name in the source array. This has the effect of creating a new ndarray containing only the fields “required” by the required_dtype.
If a field name in the required_dtype does not exist in the input array, that field is created and set to 0 in the output array.
- Parameters
- andarray
array to cast
- required_dtypedtype
datatype for output array
- Returns
- outndarray
array with the new dtype, with field values copied from the fields in the input array with the same name
Examples
>>> from numpy.lib import recfunctions as rfn >>> a = np.ones(4, dtype=[('a', 'i4'), ('b', 'f8'), ('c', 'u1')]) >>> rfn.require_fields(a, [('b', 'f4'), ('c', 'u1')]) array([(1., 1), (1., 1), (1., 1), (1., 1)], dtype=[('b', '<f4'), ('c', 'u1')]) >>> rfn.require_fields(a, [('b', 'f4'), ('newf', 'u1')]) array([(1., 0), (1., 0), (1., 0), (1., 0)], dtype=[('b', '<f4'), ('newf', 'u1')])
- numpy.lib.recfunctions.stack_arrays(arrays, defaults=None, usemask=True, asrecarray=False, autoconvert=False)[source]¶
Superposes arrays fields by fields
- Parameters
- arraysarray or sequence
Sequence of input arrays.
- defaultsdictionary, optional
Dictionary mapping field names to the corresponding default values.
- usemask{True, False}, optional
Whether to return a MaskedArray (or MaskedRecords is asrecarray==True) or a ndarray.
- asrecarray{False, True}, optional
Whether to return a recarray (or MaskedRecords if usemask==True) or just a flexible-type ndarray.
- autoconvert{False, True}, optional
Whether automatically cast the type of the field to the maximum.
Examples
>>> from numpy.lib import recfunctions as rfn >>> x = np.array([1, 2,]) >>> rfn.stack_arrays(x) is x True >>> z = np.array([('A', 1), ('B', 2)], dtype=[('A', '|S3'), ('B', float)]) >>> zz = np.array([('a', 10., 100.), ('b', 20., 200.), ('c', 30., 300.)], ... dtype=[('A', '|S3'), ('B', np.double), ('C', np.double)]) >>> test = rfn.stack_arrays((z,zz)) >>> test masked_array(data=[(b'A', 1.0, --), (b'B', 2.0, --), (b'a', 10.0, 100.0), (b'b', 20.0, 200.0), (b'c', 30.0, 300.0)], mask=[(False, False, True), (False, False, True), (False, False, False), (False, False, False), (False, False, False)], fill_value=(b'N/A', 1.e+20, 1.e+20), dtype=[('A', 'S3'), ('B', '<f8'), ('C', '<f8')])
- numpy.lib.recfunctions.structured_to_unstructured(arr, dtype=None, copy=False, casting='unsafe')[source]¶
Converts an n-D structured array into an (n+1)-D unstructured array.
The new array will have a new last dimension equal in size to the number of field-elements of the input array. If not supplied, the output datatype is determined from the numpy type promotion rules applied to all the field datatypes.
Nested fields, as well as each element of any subarray fields, all count as a single field-elements.
- Parameters
- arrndarray
Structured array or dtype to convert. Cannot contain object datatype.
- dtypedtype, optional
The dtype of the output unstructured array.
- copybool, optional
See copy argument to
ndarray.astype
. If true, always return a copy. If false, and dtype requirements are satisfied, a view is returned.- casting{‘no’, ‘equiv’, ‘safe’, ‘same_kind’, ‘unsafe’}, optional
See casting argument of
ndarray.astype
. Controls what kind of data casting may occur.
- Returns
- unstructuredndarray
Unstructured array with one more dimension.
Examples
>>> from numpy.lib import recfunctions as rfn >>> a = np.zeros(4, dtype=[('a', 'i4'), ('b', 'f4,u2'), ('c', 'f4', 2)]) >>> a array([(0, (0., 0), [0., 0.]), (0, (0., 0), [0., 0.]), (0, (0., 0), [0., 0.]), (0, (0., 0), [0., 0.])], dtype=[('a', '<i4'), ('b', [('f0', '<f4'), ('f1', '<u2')]), ('c', '<f4', (2,))]) >>> rfn.structured_to_unstructured(a) array([[0., 0., 0., 0., 0.], [0., 0., 0., 0., 0.], [0., 0., 0., 0., 0.], [0., 0., 0., 0., 0.]])
>>> b = np.array([(1, 2, 5), (4, 5, 7), (7, 8 ,11), (10, 11, 12)], ... dtype=[('x', 'i4'), ('y', 'f4'), ('z', 'f8')]) >>> np.mean(rfn.structured_to_unstructured(b[['x', 'z']]), axis=-1) array([ 3. , 5.5, 9. , 11. ])
- numpy.lib.recfunctions.unstructured_to_structured(arr, dtype=None, names=None, align=False, copy=False, casting='unsafe')[source]¶
Converts an n-D unstructured array into an (n-1)-D structured array.
The last dimension of the input array is converted into a structure, with number of field-elements equal to the size of the last dimension of the input array. By default all output fields have the input array’s dtype, but an output structured dtype with an equal number of fields-elements can be supplied instead.
Nested fields, as well as each element of any subarray fields, all count towards the number of field-elements.
- Parameters
- arrndarray
Unstructured array or dtype to convert.
- dtypedtype, optional
The structured dtype of the output array
- nameslist of strings, optional
If dtype is not supplied, this specifies the field names for the output dtype, in order. The field dtypes will be the same as the input array.
- alignboolean, optional
Whether to create an aligned memory layout.
- copybool, optional
See copy argument to
ndarray.astype
. If true, always return a copy. If false, and dtype requirements are satisfied, a view is returned.- casting{‘no’, ‘equiv’, ‘safe’, ‘same_kind’, ‘unsafe’}, optional
See casting argument of
ndarray.astype
. Controls what kind of data casting may occur.
- Returns
- structuredndarray
Structured array with fewer dimensions.
Examples
>>> from numpy.lib import recfunctions as rfn >>> dt = np.dtype([('a', 'i4'), ('b', 'f4,u2'), ('c', 'f4', 2)]) >>> a = np.arange(20).reshape((4,5)) >>> a array([[ 0, 1, 2, 3, 4], [ 5, 6, 7, 8, 9], [10, 11, 12, 13, 14], [15, 16, 17, 18, 19]]) >>> rfn.unstructured_to_structured(a, dt) array([( 0, ( 1., 2), [ 3., 4.]), ( 5, ( 6., 7), [ 8., 9.]), (10, (11., 12), [13., 14.]), (15, (16., 17), [18., 19.])], dtype=[('a', '<i4'), ('b', [('f0', '<f4'), ('f1', '<u2')]), ('c', '<f4', (2,))])